Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs73841240 | chr3:53987754 | C/T | 4.33E-15 | 487 | 15.83 | 17.65 | 10.35 | KM Plot |
| THCA | rs73860723 | chr3:127634518 | C/T | 0 | 489 | 16.27 | 14.97 | 6.03 | KM Plot |
| THCA | rs73860724 | chr3:127634611 | G/T | 0 | 490 | 16.27 | 15 | 6.03 | KM Plot |
| THCA | rs73860725 | chr3:127634629 | T/C | 0 | 490 | 16.27 | 15 | 6.03 | KM Plot |
| THCA | rs73860726 | chr3:127634687 | A/G | 0 | 490 | 16.27 | 15 | 6.03 | KM Plot |
| THCA | rs73860727 | chr3:127634727 | G/C | 0 | 490 | 16.27 | 15 | 6.03 | KM Plot |
| THCA | rs73860758 | chr3:127641699 | C/T | 0 | 490 | 16.3 | 14.97 | 6.03 | KM Plot |
| THCA | rs73860759 | chr3:127643560 | A/T | 0 | 490 | 16.3 | 14.97 | 6.03 | KM Plot |
| THCA | rs73934930 | chr19:43635550 | G/A | 0.000197 | 486 | 15.63 | 17.77 | 10.08 | KM Plot |
| THCA | rs73937019 | chr19:58228013 | G/A | 3.79E-5 | 479 | 15.13 | 17.18 | 15.13 | KM Plot |
| THCA | rs74040699 | chr13:24889769 | G/T | 0.00017 | 476 | 15.08 | 18.03 | 17.08 | KM Plot |
| THCA | rs74115303 | chr13:108911889 | G/T | 2.18E-9 | 483 | 15.23 | 17.73 | 14.22 | KM Plot |
| THCA | rs7413800 | chr1:41556839 | T/C | 3.61E-12 | 489 | 17.7 | 17.73 | 14.93 | KM Plot |
| THCA | rs74207041 | chr6:24432186 | C/G | 6.2E-7 | 479 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs74214076 | chr6:24427754 | A/G | 7.88E-15 | 485 | 16.3 | 14.8 | 11.07 | KM Plot |